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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
15
ChIP-seq
2
DNase-seq
1
RRBS
Assay category
40
Transcription
15
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
1
control
Date released
205
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
38
June, 2019
34
October, 2019
23
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
39
fastq
19
zippedFastqFolder
17
bam
17
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
80
tissue
58
primary cell
Organ
pancreas
48
epithelium
Project
40
HPAP
18
AMP
Genome assembly (visualization)
18
hg19
13
GRCh38
Lab
40
Klaus Kaestner, Upenn
18
AMP-T2D consortium
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
58 results
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single cell RNA-seq
ChIP-seq
DNase-seq
RRBS
primary cell
Langerhans cell
40
skeletal muscle myoblast
15
2
1
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