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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
47
total RNA-seq
9
ChIP-seq
3
single cell RNA-seq
Assay category
100
DNA accessibility
50
Transcription
9
DNA binding
Target of assay
3
RNA binding protein
3
control
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
0
January, 2018
Available data
102
bam
102
bigWig
48
tsv
12
fastq
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
159
Homo sapiens
Biosample type
317
cell line
277
tissue
159
primary cell
5
in vitro differentiated cells
1
stem cell
Organ
9
brain
9
epithelium
6
vasculature
3
blood vessel
3
pancreas
Project
114
AMP
45
T1D
Genome assembly (visualization)
102
hg19
54
GRCh38
Lab
114
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
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