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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
snATAC-seq
47
WGBS
45
single cell RNA-seq
40
ATAC-seq
4
ChIP-seq
1
pCHi-C
1
total RNA-seq
Assay category
88
DNA accessibility
47
DNA methylation
46
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
control
1
narrow histone mark
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
134
zippedFastqFolder
45
fastq
7
bam
7
tsv
5
bigWig
4
bed narrowPeak
3
bigBed narrowPeak
1
bed bed3
1
bed bed3+
Organism
186
Homo sapiens
Biosample type
722
tissue
186
primary cell
91
cell line
26
in vitro differentiated cells
Organ
90
epithelium
86
pancreas
4
kidney
3
connective tissue
Project
179
HPAP
7
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
179
Klaus Kaestner, Upenn
7
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
186 results
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Clear Filters
snATAC-seq
WGBS
single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
48
45
pancreatic alpha cell
31
22
pancreatic beta cell
16
13
kidney epithelial cell
4
pancreatic acinar cell
4
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