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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ATAC-seq
74
total RNA-seq
32
ChIP-seq
27
snATAC-seq
13
single cell RNA-seq
6
WGBS
1
pCHi-C
Assay category
142
DNA accessibility
87
Transcription
32
DNA binding
6
DNA methylation
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
165
bam
164
bigWig
118
fastq
78
tsv
47
bed narrowPeak
14
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
csv
Organism
268
Homo sapiens
Biosample type
738
tissue
268
primary cell
97
cell line
26
in vitro differentiated cells
Organ
78
pancreas
67
epithelium
3
connective tissue
Project
178
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
165
hg19
119
GRCh38
Lab
178
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
27
audit script error
8
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
October, 2018
BIOSAMPLE
ASSAY
268 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic alpha cell
3
10
6
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