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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
27
total RNA-seq
15
ATAC-seq
13
single cell RNA-seq
6
WGBS
1
pCHi-C
Assay category
42
DNA accessibility
40
Transcription
6
DNA methylation
Target of assay
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
0
September, 2023
Available data
86
fastq
43
bam
42
bigWig
33
tsv
15
bed narrowPeak
14
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
csv
Organism
89
Homo sapiens
Biosample type
592
tissue
96
cell line
89
primary cell
26
in vitro differentiated cells
Organ
46
epithelium
46
pancreas
3
connective tissue
Project
45
HPAP
44
AMP
Genome assembly (visualization)
43
hg19
42
GRCh38
Lab
45
Klaus Kaestner, Upenn
44
AMP-T2D consortium
Audit category:
27
audit script error
target.investigated_as!
histone
BIOSAMPLE
ASSAY
89 results
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snATAC-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
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