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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
12
ATAC-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
94
Transcription
12
DNA accessibility
9
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
76
fastq
30
tsv
22
bigWig
18
bam
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
119
Homo sapiens
Biosample type
172
tissue
119
primary cell
16
in vitro differentiated cells
6
cell line
Organ
50
epithelium
37
pancreas
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
76
HPAP
43
AMP
Genome assembly (visualization)
31
hg19
18
GRCh38
Lab
76
Klaus Kaestner, Upenn
43
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
ATAC-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
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