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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
snATAC-seq
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
15
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
31
bam
23
bigWig
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
42
Homo sapiens
Biosample type
250
tissue
42
primary cell
30
cell line
8
in vitro differentiated cells
Organ
33
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
8
blood
8
bodily fluid
1
liver
Project
34
AMP
8
T1D
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
34
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
August, 2020
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
snATAC-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
peripheral blood mononuclear cell
8
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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