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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
24
DNase-seq
13
total RNA-seq
9
RRBS
5
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
31
DNA binding
24
DNA accessibility
18
Transcription
9
DNA methylation
5
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
73
bam
69
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
28
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
1
bedpe bed3+
1
hic
Organism
87
Homo sapiens
Biosample type
280
tissue
87
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
34
epithelium
25
connective tissue
20
kidney
14
musculature of body
13
heart
12
brain
10
vasculature
7
blood vessel
5
eye
4
liver
2
adipose tissue
2
artery
1
pericardium
1
vein
Project
87
AMP
Genome assembly (visualization)
72
hg19
65
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
27
inconsistent ontology term
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
skeletal muscle satellite cell
8
1
1
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
3
1
1
1
cardiac muscle cell
3
1
1
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