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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
total RNA-seq
9
RRBS
5
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
small RNA-seq
Assay category
16
Transcription
9
DNA methylation
5
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
23
bigWig
21
bam
16
tsv
9
bed bedMethyl
9
bigBed bedMethyl
5
bed narrowPeak
5
bigBed narrowPeak
5
fastq
2
bed bed3+
2
hdf5
Organism
32
Homo sapiens
Biosample type
76
tissue
32
primary cell
Organ
18
epithelium
8
connective tissue
7
brain
7
kidney
5
heart
5
pancreas
5
vasculature
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
32
AMP
Genome assembly (visualization)
32
hg19
21
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
June, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
RRBS
ATAC-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
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