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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
3
ChIP-seq
Assay category
56
Transcription
3
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
broad histone mark
1
RNA binding protein
1
control
1
narrow histone mark
1
transcription factor
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
43
August, 2017
29
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
41
fastq
19
zippedFastqFolder
5
bigWig
3
bam
2
bed narrowPeak
2
bigBed narrowPeak
Organism
62
Homo sapiens
Biosample type
62
primary cell
59
tissue
Organ
22
epithelium
19
pancreas
3
kidney
Project
59
HPAP
3
AMP
Genome assembly (visualization)
5
GRCh38
2
hg19
Lab
59
Klaus Kaestner, Upenn
3
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
adipose tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
62 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
kidney epithelial cell
3
pancreatic beta cell
1
1
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