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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
55
total RNA-seq
16
pCHi-C
13
ATAC-seq
1
DNAme array
Assay category
69
DNA binding
55
Transcription
13
DNA accessibility
1
DNA methylation
Target of assay
118
histone
118
histone modification
66
broad histone mark
narrow histone mark
3
control
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
July, 2018
43
April, 2018
42
June, 2019
37
August, 2017
29
July, 2019
24
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
121
bigWig
109
bam
77
bed narrowPeak
52
tsv
44
tagAlign
2
bed bed3+
Organism
154
Homo sapiens
Biosample type
154
primary cell
121
in vitro differentiated cells
40
tissue
20
cell line
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
111
T1D
43
AMP
Genome assembly (visualization)
134
hg19
109
GRCh38
Lab
136
Kyle Gaulton, UCSD
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2018
organ_slims!
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNAme array
primary cell
monocyte
44
52
1
13
1
CD8-positive, alpha-beta T cell
23
2
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
neutrophil
1
1
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