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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
28
total RNA-seq
16
ATAC-seq
2
DNase-seq
1
single cell RNA-seq
Assay category
39
DNA binding
29
Transcription
18
DNA accessibility
Target of assay
38
histone
38
histone modification
20
broad histone mark
18
narrow histone mark
1
control
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
83
bam
80
bigWig
73
fastq
54
bed narrowPeak
28
tsv
14
bigBed narrowPeak
1
csv
Organism
86
Homo sapiens
Biosample type
242
tissue
86
primary cell
30
cell line
8
in vitro differentiated cells
Organ
94
epithelium
72
pancreas
21
blood vessel
21
vasculature
vein
11
kidney
1
liver
Project
86
AMP
Genome assembly (visualization)
82
GRCh38
82
hg19
Lab
86
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
May, 2022
organ_slims!
vein
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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