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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
154
ChIP-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
287
DNA accessibility
154
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
43
August, 2017
43
June, 2019
28
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
503
bam
490
bigWig
376
fastq
268
tsv
180
bed narrowPeak
153
zippedFastqFolder
85
bigBed narrowPeak
49
tagAlign
40
bed broadPeak
40
bigBed broadPeak
35
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
959
Homo sapiens
Biosample type
2356
tissue
959
primary cell
575
cell line
338
in vitro differentiated cells
9
stem cell
Organ
375
epithelium
319
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
474
AMP
324
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
504
hg19
435
GRCh38
Lab
459
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
artery
eye
target.investigated_as!
broad histone mark
other post-translational modification
BIOSAMPLE
ASSAY
959 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
10
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
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