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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
144
total RNA-seq
126
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
15
pCHi-C
7
DNase-seq
3
RRBS
2
Hi-C
1
DNAme array
1
small RNA-seq
Assay category
258
Transcription
189
DNA accessibility
175
DNA binding
4
DNA methylation
2
3D chromatin structure
Target of assay
163
histone
163
histone modification
87
broad histone mark
76
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
30
August, 2017
18
June, 2019
13
July, 2018
12
September, 2018
10
July, 2019
8
April, 2018
8
January, 2021
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
350
bigWig
331
bam
172
bed narrowPeak
168
fastq
139
tsv
96
tagAlign
73
zippedFastqFolder
33
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
csv
1
hdf5
1
hic
Organism
643
Homo sapiens
Biosample type
2214
tissue
643
primary cell
583
cell line
273
in vitro differentiated cells
9
stem cell
Organ
epithelium
346
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
267
AMP
203
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
367
hg19
279
GRCh38
Lab
238
Kyle Gaulton, UCSD
232
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
connective tissue
epithelium
stomach
BIOSAMPLE
ASSAY
643 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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