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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 267ChIP-seq
  • 237total RNA-seq
  • 198ATAC-seq
  • 183single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 25DNase-seq
  • 15pCHi-C
  • 9Hi-C
  • 9RRBS
  • 1DNAme array
  • 1FAIRE-seq
  • 1small RNA-seq
Assay category
  • 421Transcription
  • 280DNA accessibility
  • 267DNA binding
  • 57DNA methylation
  • 93D chromatin structure
Target of assay
  • 229histone
  • 229histone modification
  • 118broad histone mark
  • 111narrow histone mark
  • 32control
  • 9RNA binding protein
  • 9transcription factor
  • 1chromatin remodeller
Date released
  • 205May, 2021
  • 147May, 2020
  • 134May, 2022
  • 88February, 2023
  • 73September, 2018
  • 59August, 2017
  • 59September, 2020
  • 46July, 2018
  • 45February, 2021
  • 41April, 2018
  • 38June, 2019
  • 34October, 2019
  • 23July, 2019
  • 9November, 2017
  • 8January, 2021
  • 7August, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 581bigWig
  • 573bam
  • 406fastq
  • 278bed narrowPeak
  • 255tsv
  • 153zippedFastqFolder
  • 100tagAlign
  • 94bigBed narrowPeak
  • 43bed broadPeak
  • 43bigBed broadPeak
  • 29bed bed3+
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 3cool
  • 3hdf5
  • 2csv
  • 1tar
Organism
  • 1049Homo sapiens
Biosample type
  • 2230tissue
  • 1049primary cell
  • 662cell line
  • 297in vitro differentiated cells
  • 9stem cell
Organ
  • 406epithelium
  • 346pancreas
  • connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 521AMP
  • 324HPAP
  • 203T1D
  • 1ITG
Genome assembly (visualization)
  • 594hg19
  • 504GRCh38
Lab
  • 486AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 238Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 41inconsistent ontology term
  • 31audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

1049 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte85541511
pancreatic alpha cell13523512311
Langerhans cell8548
pancreatic beta cell13212312161
CD8-positive, alpha-beta T cell33421
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