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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
197
DNA accessibility
182
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
33
June, 2019
28
August, 2017
18
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
2
June, 2018
2
November, 2017
1
March, 2023
1
November, 2018
1
October, 2019
Available data
377
bigWig
362
bam
184
bed narrowPeak
168
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
43
bigBed narrowPeak
24
bed broadPeak
24
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
677
Homo sapiens
Biosample type
2666
tissue
677
primary cell
324
in vitro differentiated cells
223
cell line
10
stem cell
Organ
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
300
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
396
hg19
307
GRCh38
Lab
265
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
43
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
nucleotide modification
transcription factor
BIOSAMPLE
ASSAY
677 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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