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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
Assay category
81
DNA binding
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
15
August, 2017
9
June, 2019
4
September, 2018
1
November, 2017
Available data
79
bigWig
71
bed narrowPeak
69
bam
45
tagAlign
20
fastq
17
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
326
tissue
81
primary cell
49
in vitro differentiated cells
43
cell line
1
stem cell
Organ
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
41
AMP
40
T1D
Genome assembly (visualization)
79
hg19
69
GRCh38
Lab
50
Kyle Gaulton, UCSD
31
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
skeletal muscle myoblast
7
skeletal muscle satellite cell
3
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