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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187ChIP-seq
  • 154total RNA-seq
  • 128ATAC-seq
  • 117single cell RNA-seq
  • 56snATAC-seq
  • 17pCHi-C
  • 13DNase-seq
  • 4RRBS
  • 3Hi-C
  • 2small RNA-seq
  • 1DNAme array
Assay category
  • 273Transcription
  • 197DNA accessibility
  • 187DNA binding
  • 5DNA methylation
  • 33D chromatin structure
Target of assay
  • 171histone
  • 171histone modification
  • 91broad histone mark
  • 80narrow histone mark
  • 14control
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 206May, 2021
  • 147May, 2020
  • 54May, 2022
  • 51February, 2023
  • 42February, 2021
  • 40September, 2020
  • 35June, 2019
  • 30August, 2017
  • 18July, 2019
  • 15July, 2018
  • 12September, 2018
  • 10April, 2018
  • 8January, 2021
  • 6November, 2020
  • 3November, 2017
  • 2June, 2018
  • 1March, 2023
  • 1November, 2018
  • 1October, 2019
Available data
  • 382bigWig
  • 367bam
  • 189bed narrowPeak
  • 171fastq
  • 154tsv
  • 96tagAlign
  • 73zippedFastqFolder
  • 48bigBed narrowPeak
  • 27bed broadPeak
  • 27bigBed broadPeak
  • 16bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 2hdf5
  • 1bed bed3
  • 1hic
Organism
  • 682Homo sapiens
Biosample type
  • 2762tissue
  • 682primary cell
  • 583cell line
  • 370in vitro differentiated cells
  • 10stem cell
Organ
  • epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 305AMP
  • 204T1D
  • 172HPAP
  • 1ITG
Genome assembly (visualization)
  • 401hg19
  • 311GRCh38
Lab
  • 270AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 44inconsistent ontology term
  • 27audit script error
Audit category:
  • 23missing controlled_by
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

682 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte85541511
Langerhans cell8548
CD8-positive, alpha-beta T cell33421
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell21221
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