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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 209ChIP-seq
  • 166total RNA-seq
  • 129ATAC-seq
  • 113single cell RNA-seq
  • 56snATAC-seq
  • 31DNase-seq
  • 17pCHi-C
  • 10RRBS
  • 7Hi-C
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 281Transcription
  • 217DNA accessibility
  • 209DNA binding
  • 11DNA methylation
  • 73D chromatin structure
Target of assay
  • 179histone
  • 179histone modification
  • 95broad histone mark
  • 84narrow histone mark
  • 23control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 206May, 2021
  • 147May, 2020
  • 55June, 2019
  • 54May, 2022
  • 51February, 2023
  • 42February, 2021
  • 40September, 2020
  • 34October, 2019
  • 31July, 2019
  • 18August, 2017
  • 11July, 2018
  • 10April, 2018
  • 9November, 2017
  • 8January, 2021
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 4August, 2021
  • 2June, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 421bigWig
  • 415bam
  • 227bed narrowPeak
  • 162tsv
  • 151fastq
  • 100tagAlign
  • 87bigBed narrowPeak
  • 73zippedFastqFolder
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 4hdf5
  • 3hic
  • 2csv
  • 1bed bed3
  • 1bedpe bed3+
  • 1tar
Organism
  • 742Homo sapiens
Biosample type
  • 2272tissue
  • 742primary cell
  • 570cell line
  • 391in vitro differentiated cells
  • 10stem cell
Organ
  • 406epithelium
  • pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 365AMP
  • 204T1D
  • 172HPAP
  • 1ITG
Genome assembly (visualization)
  • 443hg19
  • 344GRCh38
Lab
  • 330AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 49inconsistent ontology term
  • 28audit script error
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

742 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte85541511
Langerhans cell8548
CD8-positive, alpha-beta T cell33421
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell21221
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