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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
8
snATAC-seq
5
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
14
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
8
January, 2021
6
June, 2019
5
July, 2019
3
November, 2017
1
March, 2020
Available data
31
bam
27
bigWig
20
bed narrowPeak
20
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
44
Homo sapiens
Biosample type
189
tissue
127
cell line
44
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
36
AMP
8
T1D
Genome assembly (visualization)
29
hg19
21
GRCh38
Lab
36
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
brain microvascular endothelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
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