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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
10
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
broad histone mark
7
narrow histone mark
3
control
RNA binding protein
1
transcription factor
Date released
12
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
17
bam
16
bigWig
11
bed narrowPeak
11
bigBed narrowPeak
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
21
Homo sapiens
Biosample type
94
tissue
66
cell line
21
primary cell
Organ
370
epithelium
319
pancreas
34
connective tissue
29
kidney
26
vasculature
21
blood vessel
18
brain
13
liver
13
vein
12
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
21
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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