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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
94
total RNA-seq
78
single cell RNA-seq
72
ATAC-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
172
Transcription
115
DNA binding
91
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
89
histone
89
histone modification
47
narrow histone mark
42
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
39
July, 2018
37
February, 2023
35
April, 2018
33
October, 2019
20
June, 2019
19
September, 2020
14
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
274
bam
268
fastq
263
bigWig
125
tsv
117
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
438
Homo sapiens
Biosample type
521
tissue
438
primary cell
94
cell line
24
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
286
AMP
152
HPAP
Genome assembly (visualization)
259
hg19
257
GRCh38
Lab
286
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
14
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
438 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
35
31
1
pancreatic beta cell
13
21
12
23
16
1
pancreatic acinar cell
8
4
12
9
1
pancreatic ductal cell
13
4
10
4
pancreatic endocrine cell
23
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