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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93total RNA-seq
  • 92ChIP-seq
  • 72ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 18DNase-seq
  • 7Hi-C
  • 6RRBS
  • 1FAIRE-seq
Assay category
  • 163Transcription
  • 92DNA binding
  • 91DNA accessibility
  • 53DNA methylation
  • 73D chromatin structure
Target of assay
  • 66histone
  • 66histone modification
  • 35narrow histone mark
  • 31broad histone mark
  • 21control
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 80May, 2022
  • 61September, 2018
  • 37February, 2023
  • 33April, 2018
  • 33July, 2018
  • 33October, 2019
  • 29August, 2017
  • 20June, 2019
  • 19September, 2020
  • 13July, 2019
  • 7August, 2020
  • 6February, 2021
  • 6November, 2017
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
  • 1March, 2020
Available data
  • 242bam
  • 238fastq
  • 231bigWig
  • 116tsv
  • 106bed narrowPeak
  • 80zippedFastqFolder
  • 61bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 5hic
  • 4bedpe bed3+
  • 4tagAlign
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 406Homo sapiens
Biosample type
  • 406primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 406epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 254AMP
  • 152HPAP
Genome assembly (visualization)
  • 227hg19
  • 225GRCh38
Lab
  • 254AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
Audit category:
  • 10inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

406 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
endothelial cell of umbilical vein17221
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