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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
DNase-seq
6
total RNA-seq
3
RRBS
2
ChIP-seq
Assay category
12
DNA accessibility
6
Transcription
3
DNA methylation
2
DNA binding
Target of assay
10
histone
histone modification
5
broad histone mark
5
narrow histone mark
control
2
RNA binding protein
2
transcription factor
Date released
11
June, 2019
7
July, 2019
4
October, 2019
1
May, 2019
Available data
18
bam
18
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
23
Homo sapiens
Biosample type
273
tissue
23
primary cell
16
cell line
Organ
319
epithelium
276
pancreas
28
connective tissue
23
kidney
16
vasculature
12
blood vessel
12
brain
10
liver
9
heart
8
blood
8
bodily fluid
5
vein
4
musculature of body
3
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
23
AMP
Genome assembly (visualization)
18
GRCh38
15
hg19
Lab
23
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
bone element
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
23 results
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DNase-seq
total RNA-seq
RRBS
ChIP-seq
primary cell
epithelial cell of proximal tubule
1
1
1
1
kidney epithelial cell
1
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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