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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
13
DNase-seq
7
total RNA-seq
4
RRBS
1
small RNA-seq
Assay category
25
DNA binding
13
DNA accessibility
8
Transcription
4
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
24
June, 2019
11
October, 2019
10
July, 2019
5
May, 2019
Available data
44
bam
39
bigWig
31
bed narrowPeak
25
bigBed narrowPeak
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
383
tissue
50
primary cell
19
cell line
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
pituitary gland
Project
50
AMP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
50
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
organ_slims!
vein
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
1
skeletal muscle satellite cell
8
1
1
kidney epithelial cell
5
1
1
1
kidney tubule cell
3
1
skeletal muscle cell
2
1
1
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