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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 12DNase-seq
  • 6total RNA-seq
  • 3RRBS
Assay category
  • 15DNA binding
  • 12DNA accessibility
  • 6Transcription
  • 3DNA methylation
Target of assay
  • 10histone
  • 10histone modification
  • 5broad histone mark
  • 5narrow histone mark
  • 3control
  • 2RNA binding protein
  • 2transcription factor
Date released
  • 13June, 2019
  • 11October, 2019
  • 7July, 2019
  • 5May, 2019
Available data
  • 31bam
  • 28bigWig
  • 22bed narrowPeak
  • 16bigBed narrowPeak
  • 10bed bed3+
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 36Homo sapiens
Biosample type
  • 299tissue
  • 36primary cell
  • 19cell line
Organ
  • 406epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 36AMP
Genome assembly (visualization)
  • 28GRCh38
  • 25hg19
Lab
  • 36AMP-T2D consortium
Audit category:
  • 8inconsistent ontology term
BIOSAMPLE
ASSAY

36 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule10111
kidney epithelial cell5111
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
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