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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
8
DNase-seq
7
total RNA-seq
4
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
27
DNA binding
10
DNA accessibility
7
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
22
October, 2019
6
July, 2019
6
June, 2019
6
November, 2017
5
December, 2019
4
August, 2021
1
March, 2020
Available data
44
bam
39
bigWig
27
bed narrowPeak
23
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
13
bed bed3+
7
tsv
6
fastq
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
50
Homo sapiens
Biosample type
496
tissue
467
cell line
50
primary cell
15
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
thymus
Project
50
AMP
Genome assembly (visualization)
43
hg19
33
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
spleen
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
1
5
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
Liver fetal (hepatocyte)
1
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