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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 5total RNA-seq
  • 4ChIP-seq
  • 2DNase-seq
  • 1ATAC-seq
  • 1Hi-C
  • 1RRBS
Assay category
  • 5Transcription
  • 4DNA binding
  • 3DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1broad histone mark
  • 1control
Date released
  • 5December, 2019
  • 4August, 2021
  • 2July, 2019
  • 2June, 2019
  • 1October, 2019
Available data
  • 12bam
  • 11bigWig
  • 6bed bed3+
  • 6bed narrowPeak
  • 5tsv
  • 4tagAlign
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 2bigBed narrowPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 14Homo sapiens
Biosample type
  • 401cell line
  • 361tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 406epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 14AMP
Genome assembly (visualization)
  • 13hg19
  • 11GRCh38
Lab
  • 14AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

14 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte5411
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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