Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
21
accessible chromatin
6
caQTL
6
eQTL
6
gene expression
5
binding sites
5
target gene predictions
4
candidate regulatory elements
3
chromatin state
3
histone modifications
3
variant allelic effects
Date released
14
February, 2024
12
July, 2025
11
November, 2021
9
February, 2021
6
September, 2022
3
May, 2022
3
October, 2022
1
February, 2020
1
January, 2020
1
May, 2020
1
October, 2019
Available data
41
bed bed3+
12
bigWig
8
tsv
4
bed bed3
4
bed narrowPeak
3
bed bed9
1
bigBed bed9
Organism
62
Homo sapiens
Collection Tags
18
DGA
15
T2DKP
13
T2DKP
11
AMP
7
ChIP-Atlas
6
EpiMap
3
ENCODE
3
T2D
Biosample type
305
tissue
62
primary cell
17
cell line
2
in vitro differentiated cells
Organ
831
epithelium
346
connective tissue
326
kidney
172
vasculature
150
pancreas
145
heart
122
blood vessel
100
skin of body
95
liver
62
musculature of body
60
__MARKER__
53
brain
52
adipose tissue
46
mammary gland
41
penis
40
extraembryonic component
37
artery
34
lung
23
eye
23
intestine
22
embryo
20
lymphatic vessel
20
vein
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
limb
1
pericardium
1
testis
1
thymus
Project
51
AMP
11
ENCODE
Genome assembly (visualization)
49
hg19
19
GRCh38
Encyclopedia version
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
BIOSAMPLE
TYPE
62 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
caQTL
eQTL
gene expression
binding sites
target gene predictions
candidate regulatory elements
chromatin state
histone modifications
variant allelic effects
primary cell
skeletal muscle satellite cell
6
1
1
2
2
2
2
skeletal muscle fiber
5
2
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
skeletal muscle cell
1
1
2
1
1
+ See 7 more…
See all biosamples
Download