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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81total RNA-seq
  • 74single cell RNA-seq
  • 71ATAC-seq
  • 70ChIP-seq
  • 47WGBS
  • 3Hi-C
Assay category
  • 155Transcription
  • 71DNA accessibility
  • 70DNA binding
  • 47DNA methylation
  • 33D chromatin structure
Target of assay
  • 58histone
  • 58histone modification
  • 31narrow histone mark
  • 27broad histone mark
  • 12control
Date released
  • 80May, 2022
  • 72September, 2018
  • 41August, 2017
  • 37February, 2023
  • 37July, 2018
  • 33April, 2018
  • 19September, 2020
  • 7August, 2020
  • 6February, 2021
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 258fastq
  • 194bam
  • 192bigWig
  • 108tsv
  • 80zippedFastqFolder
  • 68bed narrowPeak
  • 22bigBed narrowPeak
  • 3bedpe bed3+
  • 3cool
  • 3hic
Organism
  • 346Homo sapiens
Biosample type
  • 505tissue
  • 346primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 406epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 194AMP
  • 152HPAP
Genome assembly (visualization)
  • 192GRCh38
  • 185hg19
Lab
  • 194AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
Audit category:
  • 5inconsistent ontology term
  • 3audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

346 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell52123513311
pancreatic beta cell21122313161
pancreatic acinar cell412981
pancreatic ductal cell410413
pancreatic endocrine cell23
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