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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
14
DNA binding
7
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
12
October, 2019
6
November, 2017
5
July, 2019
4
June, 2019
1
March, 2020
Available data
23
bam
22
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
28
Homo sapiens
Biosample type
97
tissue
66
cell line
28
primary cell
Organ
375
epithelium
319
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
28
AMP
Genome assembly (visualization)
24
hg19
17
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
ovary
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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