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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 23ChIP-seq
  • 6DNase-seq
  • 4Hi-C
  • 2total RNA-seq
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 23DNA binding
  • 7DNA accessibility
  • 43D chromatin structure
  • 2Transcription
  • 1DNA methylation
Target of assay
  • 17histone
  • 17histone modification
  • 9broad histone mark
  • 8narrow histone mark
  • 4control
  • 2RNA binding protein
  • 2transcription factor
Date released
  • 21October, 2019
  • 6November, 2017
  • 5July, 2019
  • 4June, 2019
  • 1March, 2020
Available data
  • 32bam
  • 29bigWig
  • 21bed narrowPeak
  • 21bigBed narrowPeak
  • 12bed broadPeak
  • 12bigBed broadPeak
  • 8bed bed3+
  • 6fastq
  • 2hdf5
  • 2hic
  • 2tsv
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 37Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 37primary cell
Organ
  • 406epithelium
  • 346pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 37AMP
Genome assembly (visualization)
  • 31hg19
  • 22GRCh38
Lab
  • 37AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

37 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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