Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
59
total RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
3
single cell RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
279
DNA binding
62
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
145
May, 2020
101
May, 2022
59
August, 2017
55
June, 2019
46
September, 2018
36
February, 2021
32
October, 2019
29
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
421
bigWig
419
bam
295
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
80
tsv
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
714
Homo sapiens
Biosample type
1461
tissue
714
primary cell
543
cell line
256
in vitro differentiated cells
10
stem cell
Organ
248
epithelium
191
pancreas
37
vasculature
34
kidney
31
blood vessel
30
connective tissue
22
vein
21
brain
13
heart
13
musculature of body
9
liver
8
blood
8
bodily fluid
5
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
413
AMP
153
T1D
147
HPAP
1
ITG
Genome assembly (visualization)
436
hg19
346
GRCh38
Lab
380
AMP-T2D consortium
186
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
714 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
single cell RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
2
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
2
1
+ See 80 more…
See all biosamples
Download