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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
164
total RNA-seq
142
ATAC-seq
107
single cell RNA-seq
54
snATAC-seq
47
WGBS
26
DNase-seq
12
pCHi-C
10
RRBS
5
Hi-C
1
FAIRE-seq
Assay category
271
Transcription
223
DNA accessibility
218
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
178
histone
178
histone modification
96
broad histone mark
82
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
126
May, 2021
76
February, 2023
72
September, 2018
59
August, 2017
59
May, 2020
59
September, 2020
45
February, 2021
45
June, 2019
30
October, 2019
17
July, 2019
10
April, 2018
9
November, 2017
7
August, 2020
6
January, 2021
6
July, 2018
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
2
June, 2018
2
October, 2018
1
November, 2018
Available data
348
bigWig
341
bam
332
fastq
236
bed narrowPeak
153
zippedFastqFolder
100
bigBed narrowPeak
97
tsv
50
tagAlign
46
bed broadPeak
46
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
1
csv
1
hic
1
tar
Organism
786
Homo sapiens
Biosample type
2535
tissue
786
primary cell
662
cell line
282
in vitro differentiated cells
9
stem cell
Organ
327
epithelium
279
pancreas
34
vasculature
28
blood vessel
26
kidney
21
brain
21
vein
18
connective tissue
12
musculature of body
10
liver
8
heart
6
blood
6
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
377
AMP
321
HPAP
88
T1D
Genome assembly (visualization)
361
hg19
315
GRCh38
Lab
342
AMP-T2D consortium
321
Klaus Kaestner, Upenn
123
Kyle Gaulton, UCSD
Audit category:
29
inconsistent ontology term
28
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
replication_type!
anisogenic
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
1
31
monocyte
38
28
13
1
pancreatic beta cell
13
21
23
1
16
exocrine cell
39
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