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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 164total RNA-seq
  • 142ATAC-seq
  • 107single cell RNA-seq
  • 54snATAC-seq
  • 47WGBS
  • 26DNase-seq
  • 12pCHi-C
  • 10RRBS
  • 5Hi-C
  • 1FAIRE-seq
Assay category
  • 271Transcription
  • 223DNA accessibility
  • 218DNA binding
  • 57DNA methylation
  • 53D chromatin structure
Target of assay
  • 178histone
  • 178histone modification
  • 96broad histone mark
  • 82narrow histone mark
  • 33control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 134May, 2022
  • 126May, 2021
  • 76February, 2023
  • 72September, 2018
  • 59August, 2017
  • 59May, 2020
  • 59September, 2020
  • 45February, 2021
  • 45June, 2019
  • 30October, 2019
  • 17July, 2019
  • 10April, 2018
  • 9November, 2017
  • 7August, 2020
  • 6January, 2021
  • 6July, 2018
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 2June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 348bigWig
  • 341bam
  • 332fastq
  • 236bed narrowPeak
  • 153zippedFastqFolder
  • 100bigBed narrowPeak
  • 97tsv
  • 50tagAlign
  • 46bed broadPeak
  • 46bigBed broadPeak
  • 30bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 4hdf5
  • 1csv
  • 1hic
  • 1tar
Organism
  • 786Homo sapiens
Biosample type
  • 2535tissue
  • 786primary cell
  • 662cell line
  • 282in vitro differentiated cells
  • 9stem cell
Organ
  • 327epithelium
  • 279pancreas
  • 34vasculature
  • 28blood vessel
  • 26kidney
  • 21brain
  • 21vein
  • 18connective tissue
  • 12musculature of body
  • 10liver
  • 8heart
  • 6blood
  • 6bodily fluid
  • 5eye
  • 1bone element
  • 1bone marrow
Project
  • 377AMP
  • 321HPAP
  • 88T1D
Genome assembly (visualization)
  • 361hg19
  • 315GRCh38
Lab
  • 342AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 123Kyle Gaulton, UCSD
Audit category:
  • 29inconsistent ontology term
  • 28audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

786 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell8548
pancreatic alpha cell135235131
monocyte3828131
pancreatic beta cell132123116
exocrine cell39
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