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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
221
ChIP-seq
183
single cell RNA-seq
145
ATAC-seq
56
snATAC-seq
41
WGBS
13
DNase-seq
6
Hi-C
5
pCHi-C
2
small RNA-seq
1
DNAme array
Assay category
426
Transcription
221
DNA binding
214
DNA accessibility
42
DNA methylation
6
3D chromatin structure
Target of assay
192
histone
192
histone modification
101
broad histone mark
91
narrow histone mark
28
control
1
RNA binding protein
1
transcription factor
Date released
194
May, 2021
134
May, 2022
92
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
47
July, 2018
43
April, 2018
42
February, 2021
40
August, 2017
24
June, 2019
16
October, 2019
14
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
528
bigWig
522
bam
378
fastq
254
tsv
227
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
41
bigBed narrowPeak
17
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
914
Homo sapiens
Biosample type
2666
tissue
914
primary cell
323
in vitro differentiated cells
199
cell line
7
stem cell
Organ
347
epithelium
339
pancreas
33
connective tissue
21
kidney
9
heart
9
vasculature
8
blood
8
blood vessel
8
bodily fluid
7
liver
4
brain
4
musculature of body
4
vein
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
403
AMP
318
HPAP
192
T1D
1
ITG
Genome assembly (visualization)
535
hg19
462
GRCh38
Lab
368
AMP-T2D consortium
318
Klaus Kaestner, Upenn
227
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
replication_type!
isogenic
BIOSAMPLE
ASSAY
914 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
pancreatic alpha cell
52
13
12
35
25
1
Langerhans cell
85
48
pancreatic beta cell
21
12
12
23
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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