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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 241total RNA-seq
  • 221ChIP-seq
  • 183single cell RNA-seq
  • 145ATAC-seq
  • 56snATAC-seq
  • 41WGBS
  • 13DNase-seq
  • 6Hi-C
  • 5pCHi-C
  • 2small RNA-seq
  • 1DNAme array
Assay category
  • 426Transcription
  • 221DNA binding
  • 214DNA accessibility
  • 42DNA methylation
  • 63D chromatin structure
Target of assay
  • 192histone
  • 192histone modification
  • 101broad histone mark
  • 91narrow histone mark
  • 28control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 194May, 2021
  • 134May, 2022
  • 92May, 2020
  • 88February, 2023
  • 73September, 2018
  • 59September, 2020
  • 47July, 2018
  • 43April, 2018
  • 42February, 2021
  • 40August, 2017
  • 24June, 2019
  • 16October, 2019
  • 14July, 2019
  • 8January, 2021
  • 7August, 2020
  • 6November, 2020
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3June, 2018
  • 3November, 2017
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1May, 2019
  • 1November, 2018
Available data
  • 528bigWig
  • 522bam
  • 378fastq
  • 254tsv
  • 227bed narrowPeak
  • 153zippedFastqFolder
  • 88tagAlign
  • 41bigBed narrowPeak
  • 17bed bed3+
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 6hic
  • 4bedpe bed3+
  • 3cool
  • 2csv
  • 1bed bed3
Organism
  • 914Homo sapiens
Biosample type
  • 2666tissue
  • 914primary cell
  • 323in vitro differentiated cells
  • 199cell line
  • 7stem cell
Organ
  • 347epithelium
  • 339pancreas
  • 33connective tissue
  • 21kidney
  • 9heart
  • 9vasculature
  • 8blood
  • 8blood vessel
  • 8bodily fluid
  • 7liver
  • 4brain
  • 4musculature of body
  • 4vein
  • 2adipose tissue
  • 2artery
  • 1eye
  • 1pericardium
Project
  • 403AMP
  • 318HPAP
  • 192T1D
  • 1ITG
Genome assembly (visualization)
  • 535hg19
  • 462GRCh38
Lab
  • 368AMP-T2D consortium
  • 318Klaus Kaestner, Upenn
  • 227Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 35inconsistent ontology term
  • 31audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

914 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
DNAme array
primary cell
monocyte5485151
pancreatic alpha cell52131235251
Langerhans cell8548
pancreatic beta cell21121223161
CD8-positive, alpha-beta T cell43321
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