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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
113
ATAC-seq
89
total RNA-seq
84
single cell RNA-seq
23
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
6
WGBS
2
small RNA-seq
2
snATAC-seq
1
DNAme array
1
FAIRE-seq
Assay category
175
Transcription
139
DNA accessibility
119
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
104
histone
104
histone modification
57
narrow histone mark
47
broad histone mark
9
RNA binding protein
9
control
9
transcription factor
1
chromatin remodeller
Date released
143
May, 2020
92
May, 2021
43
July, 2018
41
June, 2019
33
April, 2018
31
July, 2019
22
October, 2019
19
August, 2017
12
February, 2023
9
February, 2021
6
November, 2017
5
December, 2019
4
August, 2021
4
May, 2019
3
August, 2018
3
October, 2022
2
January, 2021
1
June, 2018
1
March, 2020
1
March, 2023
1
September, 2018
Available data
355
bam
350
bigWig
189
tsv
127
bed narrowPeak
108
fastq
77
bigBed narrowPeak
62
tagAlign
41
bed broadPeak
41
bigBed broadPeak
27
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
476
Homo sapiens
Biosample type
476
primary cell
463
cell line
353
tissue
183
in vitro differentiated cells
4
stem cell
Organ
138
epithelium
74
pancreas
31
vasculature
27
connective tissue
26
blood vessel
25
kidney
19
vein
17
brain
12
musculature of body
11
liver
9
heart
4
eye
2
adipose tissue
2
artery
2
blood
2
bodily fluid
1
bone element
1
bone marrow
1
pericardium
Project
338
AMP
128
T1D
9
HPAP
1
ITG
Genome assembly (visualization)
360
hg19
295
GRCh38
Lab
338
AMP-T2D consortium
128
Kyle Gaulton, UCSD
9
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
3
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
replication_type!
unreplicated
BIOSAMPLE
ASSAY
476 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
snATAC-seq
DNAme array
FAIRE-seq
primary cell
monocyte
47
2
26
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
16
1
1
1
skeletal muscle myoblast
15
1
2
1
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