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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 119ChIP-seq
  • 113ATAC-seq
  • 89total RNA-seq
  • 84single cell RNA-seq
  • 23DNase-seq
  • 17pCHi-C
  • 10RRBS
  • 9Hi-C
  • 6WGBS
  • 2small RNA-seq
  • 2snATAC-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 175Transcription
  • 139DNA accessibility
  • 119DNA binding
  • 17DNA methylation
  • 93D chromatin structure
Target of assay
  • 104histone
  • 104histone modification
  • 57narrow histone mark
  • 47broad histone mark
  • 9RNA binding protein
  • 9control
  • 9transcription factor
  • 1chromatin remodeller
Date released
  • 143May, 2020
  • 92May, 2021
  • 43July, 2018
  • 41June, 2019
  • 33April, 2018
  • 31July, 2019
  • 22October, 2019
  • 19August, 2017
  • 12February, 2023
  • 9February, 2021
  • 6November, 2017
  • 5December, 2019
  • 4August, 2021
  • 4May, 2019
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 1June, 2018
  • 1March, 2020
  • 1March, 2023
  • 1September, 2018
Available data
  • 355bam
  • 350bigWig
  • 189tsv
  • 127bed narrowPeak
  • 108fastq
  • 77bigBed narrowPeak
  • 62tagAlign
  • 41bed broadPeak
  • 41bigBed broadPeak
  • 27bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 5hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 1bed bed3
  • 1csv
  • 1tar
Organism
  • 476Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 138epithelium
  • 74pancreas
  • 31vasculature
  • 27connective tissue
  • 26blood vessel
  • 25kidney
  • 19vein
  • 17brain
  • 12musculature of body
  • 11liver
  • 9heart
  • 4eye
  • 2adipose tissue
  • 2artery
  • 2blood
  • 2bodily fluid
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 338AMP
  • 128T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 360hg19
  • 295GRCh38
Lab
  • 338AMP-T2D consortium
  • 128Kyle Gaulton, UCSD
  • 9Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 44inconsistent ontology term
  • 3audit script error
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

476 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
snATAC-seq
DNAme array
FAIRE-seq
primary cell
monocyte4722611
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
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