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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 83total RNA-seq
  • 80single cell RNA-seq
  • 61ChIP-seq
  • 58ATAC-seq
  • 5DNase-seq
  • 5Hi-C
  • 5pCHi-C
  • 2small RNA-seq
  • 2snATAC-seq
  • 1DNAme array
Assay category
  • 165Transcription
  • 65DNA accessibility
  • 61DNA binding
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 59histone
  • 59histone modification
  • 33narrow histone mark
  • 26broad histone mark
  • 2control
Date released
  • 88May, 2020
  • 80May, 2021
  • 42July, 2018
  • 33April, 2018
  • 14July, 2019
  • 12February, 2023
  • 10June, 2019
  • 4August, 2021
  • 4October, 2019
  • 3August, 2018
  • 3February, 2021
  • 3October, 2022
  • 2January, 2021
  • 1June, 2018
  • 1March, 2020
  • 1March, 2023
  • 1September, 2018
Available data
  • 268bam
  • 265bigWig
  • 173tsv
  • 77fastq
  • 59bed narrowPeak
  • 50tagAlign
  • 9bigBed narrowPeak
  • 7bed bed3+
  • 5hic
  • 4bedpe bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 3cool
  • 1bed bed3
  • 1csv
Organism
  • 302Homo sapiens
Biosample type
  • 302primary cell
  • 242tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 79epithelium
  • 67pancreas
  • 21connective tissue
  • 10kidney
  • 5heart
  • 4liver
  • 3blood vessel
  • 3vasculature
  • 2adipose tissue
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2musculature of body
  • 1pericardium
  • 1vein
Project
  • 182AMP
  • 116T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 267hg19
  • 221GRCh38
Lab
  • 182AMP-T2D consortium
  • 116Kyle Gaulton, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 25inconsistent ontology term
  • 3audit script error
BIOSAMPLE
ASSAY

302 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
snATAC-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
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