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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
total RNA-seq
80
single cell RNA-seq
61
ChIP-seq
58
ATAC-seq
5
DNase-seq
5
Hi-C
5
pCHi-C
2
small RNA-seq
2
snATAC-seq
1
DNAme array
Assay category
165
Transcription
65
DNA accessibility
61
DNA binding
5
3D chromatin structure
1
DNA methylation
Target of assay
59
histone
59
histone modification
33
narrow histone mark
26
broad histone mark
2
control
Date released
88
May, 2020
80
May, 2021
42
July, 2018
33
April, 2018
14
July, 2019
12
February, 2023
10
June, 2019
4
August, 2021
4
October, 2019
3
August, 2018
3
February, 2021
3
October, 2022
2
January, 2021
1
June, 2018
1
March, 2020
1
March, 2023
1
September, 2018
Available data
268
bam
265
bigWig
173
tsv
77
fastq
59
bed narrowPeak
50
tagAlign
9
bigBed narrowPeak
7
bed bed3+
5
hic
4
bedpe bed3+
3
bed broadPeak
3
bigBed broadPeak
3
cool
1
bed bed3
1
csv
Organism
302
Homo sapiens
Biosample type
302
primary cell
242
tissue
112
in vitro differentiated cells
1
stem cell
Organ
79
epithelium
67
pancreas
21
connective tissue
10
kidney
5
heart
4
liver
3
blood vessel
3
vasculature
2
adipose tissue
2
artery
2
blood
2
bodily fluid
2
musculature of body
1
pericardium
1
vein
Project
182
AMP
116
T1D
3
HPAP
1
ITG
Genome assembly (visualization)
267
hg19
221
GRCh38
Lab
182
AMP-T2D consortium
116
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
25
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
snATAC-seq
DNAme array
primary cell
monocyte
26
47
2
1
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic delta cell
10
pancreatic acinar cell
8
1
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