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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
55
ATAC-seq
18
DNase-seq
12
pCHi-C
10
RRBS
6
WGBS
6
total RNA-seq
4
Hi-C
4
single cell RNA-seq
1
FAIRE-seq
Assay category
74
DNA accessibility
58
DNA binding
16
DNA methylation
10
Transcription
4
3D chromatin structure
Target of assay
45
histone
45
histone modification
24
narrow histone mark
21
broad histone mark
9
RNA binding protein
9
transcription factor
7
control
1
chromatin remodeller
Date released
55
May, 2020
31
June, 2019
19
August, 2017
18
October, 2019
17
July, 2019
12
May, 2021
6
February, 2021
6
November, 2017
5
December, 2019
4
May, 2019
1
July, 2018
Available data
87
bam
85
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
31
fastq
20
bed bed3+
16
tsv
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
1
tar
Organism
174
Homo sapiens
Biosample type
463
cell line
174
primary cell
111
tissue
71
in vitro differentiated cells
3
stem cell
Organ
59
epithelium
28
vasculature
23
blood vessel
18
vein
17
brain
15
kidney
10
musculature of body
7
liver
7
pancreas
6
connective tissue
4
eye
4
heart
1
bone element
1
bone marrow
Project
156
AMP
12
T1D
6
HPAP
Genome assembly (visualization)
93
hg19
74
GRCh38
Lab
156
AMP-T2D consortium
12
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
19
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
174 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RRBS
WGBS
total RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
skeletal muscle myoblast
15
2
1
1
endothelial cell of umbilical vein
16
1
1
macrophage
11
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