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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 58ChIP-seq
  • 55ATAC-seq
  • 18DNase-seq
  • 12pCHi-C
  • 10RRBS
  • 6WGBS
  • 6total RNA-seq
  • 4Hi-C
  • 4single cell RNA-seq
  • 1FAIRE-seq
Assay category
  • 74DNA accessibility
  • 58DNA binding
  • 16DNA methylation
  • 10Transcription
  • 43D chromatin structure
Target of assay
  • 45histone
  • 45histone modification
  • 24narrow histone mark
  • 21broad histone mark
  • 9RNA binding protein
  • 9transcription factor
  • 7control
  • 1chromatin remodeller
Date released
  • 55May, 2020
  • 31June, 2019
  • 19August, 2017
  • 18October, 2019
  • 17July, 2019
  • 12May, 2021
  • 6February, 2021
  • 6November, 2017
  • 5December, 2019
  • 4May, 2019
  • 1July, 2018
Available data
  • 87bam
  • 85bigWig
  • 68bed narrowPeak
  • 68bigBed narrowPeak
  • 38bed broadPeak
  • 38bigBed broadPeak
  • 31fastq
  • 20bed bed3+
  • 16tsv
  • 12tagAlign
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 4hdf5
  • 1tar
Organism
  • 174Homo sapiens
Biosample type
  • 463cell line
  • 174primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 59epithelium
  • 28vasculature
  • 23blood vessel
  • 18vein
  • 17brain
  • 15kidney
  • 10musculature of body
  • 7liver
  • 7pancreas
  • 6connective tissue
  • 4eye
  • 4heart
  • 1bone element
  • 1bone marrow
Project
  • 156AMP
  • 12T1D
  • 6HPAP
Genome assembly (visualization)
  • 93hg19
  • 74GRCh38
Lab
  • 156AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

174 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RRBS
WGBS
total RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15211
endothelial cell of umbilical vein1611
macrophage11
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