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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 160ChIP-seq
  • 158total RNA-seq
  • 103single cell RNA-seq
  • 87ATAC-seq
  • 54snATAC-seq
  • 41WGBS
  • 8DNase-seq
  • 1Hi-C
Assay category
  • 261Transcription
  • 160DNA binding
  • 149DNA accessibility
  • 41DNA methylation
  • 13D chromatin structure
Target of assay
  • 133histone
  • 133histone modification
  • 75broad histone mark
  • 58narrow histone mark
  • 26control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 134May, 2022
  • 114May, 2021
  • 76February, 2023
  • 72September, 2018
  • 59September, 2020
  • 40August, 2017
  • 39February, 2021
  • 14June, 2019
  • 12October, 2019
  • 10April, 2018
  • 7August, 2020
  • 6January, 2021
  • 6November, 2020
  • 5July, 2018
  • 5September, 2017
  • 4May, 2020
  • 3November, 2017
  • 2June, 2018
  • 2October, 2018
  • 1May, 2019
  • 1November, 2018
Available data
  • 301fastq
  • 263bigWig
  • 254bam
  • 168bed narrowPeak
  • 153zippedFastqFolder
  • 81tsv
  • 38tagAlign
  • 32bigBed narrowPeak
  • 10bed bed3+
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 1csv
  • 1hic
Organism
  • 612Homo sapiens
Biosample type
  • 2424tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • 199cell line
  • 6stem cell
Organ
  • 272pancreas
  • 268epithelium
  • 12connective tissue
  • 11kidney
  • 6blood
  • 6bodily fluid
  • 6vasculature
  • 5blood vessel
  • 4brain
  • 4heart
  • 3liver
  • 3vein
  • 2musculature of body
  • 1eye
Project
  • 315HPAP
  • 221AMP
  • 76T1D
Genome assembly (visualization)
  • 268hg19
  • 241GRCh38
Lab
  • 315Klaus Kaestner, Upenn
  • 186AMP-T2D consortium
  • 111Kyle Gaulton, UCSD
Audit category:
  • 28audit script error
  • 10inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

612 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
primary cell
Langerhans cell8548
pancreatic alpha cell135213525
monocyte382813
pancreatic beta cell122112316
exocrine cell39
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