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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
158
total RNA-seq
103
single cell RNA-seq
87
ATAC-seq
54
snATAC-seq
41
WGBS
8
DNase-seq
1
Hi-C
Assay category
261
Transcription
160
DNA binding
149
DNA accessibility
41
DNA methylation
1
3D chromatin structure
Target of assay
133
histone
133
histone modification
75
broad histone mark
58
narrow histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
114
May, 2021
76
February, 2023
72
September, 2018
59
September, 2020
40
August, 2017
39
February, 2021
14
June, 2019
12
October, 2019
10
April, 2018
7
August, 2020
6
January, 2021
6
November, 2020
5
July, 2018
5
September, 2017
4
May, 2020
3
November, 2017
2
June, 2018
2
October, 2018
1
May, 2019
1
November, 2018
Available data
301
fastq
263
bigWig
254
bam
168
bed narrowPeak
153
zippedFastqFolder
81
tsv
38
tagAlign
32
bigBed narrowPeak
10
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
1
csv
1
hic
Organism
612
Homo sapiens
Biosample type
2424
tissue
612
primary cell
211
in vitro differentiated cells
199
cell line
6
stem cell
Organ
272
pancreas
268
epithelium
12
connective tissue
11
kidney
6
blood
6
bodily fluid
6
vasculature
5
blood vessel
4
brain
4
heart
3
liver
3
vein
2
musculature of body
1
eye
Project
315
HPAP
221
AMP
76
T1D
Genome assembly (visualization)
268
hg19
241
GRCh38
Lab
315
Klaus Kaestner, Upenn
186
AMP-T2D consortium
111
Kyle Gaulton, UCSD
Audit category:
28
audit script error
10
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
612 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
52
1
35
25
monocyte
38
28
13
pancreatic beta cell
12
21
1
23
16
exocrine cell
39
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