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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 247total RNA-seq
  • 200ATAC-seq
  • 187single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 42ChIP-seq
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 436Transcription
  • 288DNA accessibility
  • 58DNA methylation
  • 42DNA binding
  • 103D chromatin structure
Target of assay
  • 237histone
  • histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 147May, 2020
  • 134May, 2022
  • 88February, 2023
  • 88May, 2021
  • 59September, 2020
  • 48February, 2021
  • 48July, 2018
  • 43April, 2018
  • 41September, 2018
  • 36June, 2019
  • 31July, 2019
  • 21August, 2017
  • 13October, 2019
  • 8January, 2021
  • 7August, 2020
  • 6November, 2017
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2May, 2019
  • 2October, 2018
  • 1August, 2021
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 406bam
  • 383bigWig
  • 336fastq
  • 270tsv
  • 153zippedFastqFolder
  • 79bed narrowPeak
  • 62bigBed narrowPeak
  • 34bed bed3+
  • 33bed broadPeak
  • 33bigBed broadPeak
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 2tagAlign
  • 1bed bed3
  • 1tar
Organism
  • 851Homo sapiens
Biosample type
  • 2149tissue
  • 851primary cell
  • 624cell line
  • 282in vitro differentiated cells
  • 8stem cell
Organ
  • 340epithelium
  • 288pancreas
  • 31connective tissue
  • 26kidney
  • 20vasculature
  • 18brain
  • 15blood vessel
  • 11heart
  • 11liver
  • 8blood
  • 8bodily fluid
  • 7vein
  • 6musculature of body
  • 4eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 406AMP
  • 324HPAP
  • 120T1D
  • 1ITG
Genome assembly (visualization)
  • 398hg19
  • 338GRCh38
Lab
  • 401AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 125Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 37inconsistent ontology term
  • 31audit script error
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

851 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell5235123161
Langerhans cell8548
pancreatic beta cell2123121661
monocyte541511
exocrine cell39
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