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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
3
single cell RNA-seq
Assay category
41
DNA binding
3
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
14
August, 2017
12
June, 2019
6
November, 2017
3
July, 2019
3
May, 2021
3
October, 2019
2
May, 2019
1
August, 2021
Available data
41
bam
20
fastq
19
bigWig
9
bed narrowPeak
9
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
tagAlign
Organism
44
Homo sapiens
Biosample type
215
tissue
136
cell line
47
in vitro differentiated cells
44
primary cell
1
stem cell
Organ
26
epithelium
12
pancreas
9
brain
6
vasculature
5
kidney
4
blood vessel
4
connective tissue
3
heart
2
eye
2
musculature of body
2
vein
1
liver
Project
44
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
41
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
target.investigated_as!
chromatin remodeller
narrow histone mark
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
3
epithelial cell of proximal tubule
3
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