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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 237ChIP-seq
Assay category
  • 237DNA binding
Target of assay
  • 237histone
  • 237histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 118May, 2021
  • 38August, 2017
  • 32September, 2018
  • 21October, 2019
  • 19June, 2019
  • 3August, 2021
  • 3May, 2019
  • 3November, 2017
Available data
  • 230bigWig
  • 216bed narrowPeak
  • 203bam
  • 98tagAlign
  • 73fastq
  • 47bigBed narrowPeak
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 3bed bed3+
Organism
  • 237Homo sapiens
Biosample type
  • 628tissue
  • 237primary cell
  • 112in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 66epithelium
  • 58pancreas
  • 17vasculature
  • 16blood vessel
  • 15vein
  • 10kidney
  • 8connective tissue
  • 8musculature of body
  • 3brain
  • 3liver
  • 2heart
  • 1eye
Project
  • 153AMP
  • 84T1D
Genome assembly (visualization)
  • 230hg19
  • 198GRCh38
Lab
  • 123AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

237 results

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Clear Filters
ChIP-seq
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
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