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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 115ChIP-seq
Assay category
  • 115DNA binding
Target of assay
  • 237histone
  • 237histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 52May, 2021
  • 22August, 2017
  • 15September, 2018
  • 11June, 2019
  • 9October, 2019
  • 3November, 2017
  • 2August, 2021
  • 1May, 2019
Available data
  • 112bigWig
  • 104bed narrowPeak
  • 103bam
  • 47tagAlign
  • 40fastq
  • 26bigBed narrowPeak
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 2bed bed3+
Organism
  • 115Homo sapiens
Biosample type
  • 324tissue
  • 115primary cell
  • 55in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 35epithelium
  • 31pancreas
  • 8vasculature
  • 7blood vessel
  • 6vein
  • 5kidney
  • 4connective tissue
  • 4musculature of body
  • 3brain
  • 2heart
  • 2liver
  • 1eye
Project
  • 75AMP
  • 40T1D
Genome assembly (visualization)
  • 112hg19
  • 102GRCh38
Lab
  • 65AMP-T2D consortium
  • 50Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
Audit category:
  • 23missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

115 results

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Clear Filters
ChIP-seq
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
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