Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
927
total RNA-seq
614
ChIP-seq
193
ATAC-seq
168
single cell RNA-seq
163
DNase-seq
87
RNA microarray
28
pCHi-C
28
snATAC-seq
16
small RNA-seq
15
Hi-C
15
WGBS
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
1113
Transcription
614
DNA binding
386
DNA accessibility
23
DNA methylation
15
3D chromatin structure
Target of assay
500
histone
500
histone modification
278
narrow histone mark
222
broad histone mark
104
control
12
transcription factor
10
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
118
July, 2018
109
August, 2017
82
November, 2017
80
April, 2019
70
July, 2019
65
May, 2019
60
February, 2023
47
September, 2023
42
May, 2022
41
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
22
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
March, 2023
1
August, 2022
Available data
1823
bam
1705
bigWig
1066
tsv
886
bed narrowPeak
499
bigBed narrowPeak
fastq
238
tagAlign
208
bed broadPeak
203
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2269
Homo sapiens
Biosample type
2267
tissue
648
primary cell
246
in vitro differentiated cells
169
cell line
6
stem cell
Organ
505
connective tissue
445
adipose tissue
313
heart
299
kidney
292
pancreas
278
liver
253
brain
158
bone element
133
blood vessel
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2174
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1474
GRCh38
1391
hg19
Lab
1945
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
92
inconsistent ontology term
9
audit script error
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2273 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
CRISPR RNA-seq
CRISPRi RNA-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
4
7
3
1
4
liver
167
78
20
1
1
1
1
2
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 169 more…
stem cell
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download