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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
723
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
723
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
468
histone modification
467
histone
244
narrow histone mark
223
broad histone mark
168
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
49
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1908
bam
1773
bigWig
1080
tsv
984
bed narrowPeak
559
bigBed narrowPeak
379
fastq
238
tagAlign
213
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1901
Homo sapiens
Biosample type
1905
tissue
608
primary cell
552
cell line
288
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
286
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1906
AMP
2
T1D
Genome assembly (visualization)
1704
GRCh38
1649
hg19
Lab
1883
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1908 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
30
1
38
6
1
liver
147
120
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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stem cell
hESC
3
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