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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
Assay category
63
DNA binding
Target of assay
64
transcription factor
60
histone modification
59
histone
41
control
35
broad histone mark
24
narrow histone mark
4
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
40
August, 2017
October, 2018
7
December, 2017
7
October, 2017
6
January, 2019
3
November, 2018
Available data
497
bigWig
495
bed narrowPeak
441
bam
285
bigBed narrowPeak
186
tagAlign
63
fastq
35
bed broadPeak
14
bed bed3+
1
tagAlign bed3+
Organism
57
Homo sapiens
Biosample type
73
primary cell
65
in vitro differentiated cells
61
tissue
18
cell line
2
stem cell
Organ
26
pancreas
18
liver
9
spleen
7
brain
1
adipose tissue
1
connective tissue
Project
63
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
63
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2018
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
tissue
islet of Langerhans
14
liver
13
pancreas
12
spleen
9
brain
7
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stem cell
hESC
2
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