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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1003
total RNA-seq
881
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
28
pCHi-C
27
snATAC-seq
26
WGBS
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1199
Transcription
881
DNA binding
436
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
605
histone modification
604
histone
316
narrow histone mark
288
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
51
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
March, 2023
1
August, 2022
Available data
1866
bam
1718
bigWig
1050
tsv
935
bed narrowPeak
523
bigBed narrowPeak
379
fastq
223
tagAlign
175
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2671
Homo sapiens
Biosample type
2672
tissue
1066
primary cell
601
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
504
pancreas
486
adipose tissue
360
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2583
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1820
GRCh38
1697
hg19
1
hg18
Lab
2328
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2020
organ_slims!
blood
musculature of body
BIOSAMPLE
ASSAY
2682 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 165 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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