Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
910
ChIP-seq
587
total RNA-seq
248
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
pCHi-C
28
snATAC-seq
27
WGBS
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
910
DNA binding
779
Transcription
458
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
51
December, 2017
47
September, 2023
43
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1457
bam
1331
bigWig
978
bed narrowPeak
627
tsv
561
bigBed narrowPeak
380
fastq
238
tagAlign
212
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
tagAlign bed3+
Organism
2225
Homo sapiens
Biosample type
2226
tissue
1040
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
500
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
104
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2137
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1408
GRCh38
1303
hg19
1
hg18
Lab
1887
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
8
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
March, 2019
organ_slims!
large intestine
BIOSAMPLE
ASSAY
2236 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
71
292
64
1
6
4
7
2
1
1
4
liver
145
167
20
2
1
3
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
+ See 161 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download