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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
701
ChIP-seq
570
total RNA-seq
248
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
28
snATAC-seq
27
WGBS
27
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
758
Transcription
701
DNA binding
430
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
446
histone modification
445
histone
234
broad histone mark
211
narrow histone mark
163
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
51
December, 2017
47
September, 2023
42
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1232
bam
1129
bigWig
786
bed narrowPeak
605
tsv
445
bigBed narrowPeak
369
fastq
181
bed bed3+
177
bed broadPeak
149
bigBed broadPeak
120
tagAlign
68
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
4
bed bed3
1
bedpe
Organism
1966
Homo sapiens
Biosample type
1967
tissue
1019
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
505
pancreas
360
liver
313
heart
291
kidney
brain
133
blood vessel
133
vasculature
116
limb
104
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1878
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1207
GRCh38
1163
hg19
1
hg18
Lab
1623
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
organ_slims!
brain
BIOSAMPLE
ASSAY
1977 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
71
292
67
6
1
7
4
3
1
4
1
liver
145
167
20
2
3
1
1
1
1
kidney
27
49
75
59
13
6
1
1
1
heart left ventricle
35
3
2
18
3
4
1
1
1
left cardiac atrium
40
18
1
+ See 81 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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