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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
615
total RNA-seq
224
ATAC-seq
180
single cell RNA-seq
173
DNase-seq
86
RNA microarray
28
snATAC-seq
20
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
832
DNA binding
809
Transcription
429
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
594
histone modification
593
histone
310
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
224
August, 2017
220
October, 2019
193
May, 2020
159
February, 2021
159
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
66
May, 2022
63
February, 2023
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
22
February, 2020
22
October, 2017
19
April, 2020
19
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
March, 2019
1
August, 2022
1
January, 2018
Available data
1463
bam
1346
bigWig
941
bed narrowPeak
672
tsv
548
bigBed narrowPeak
333
fastq
230
tagAlign
206
bed broadPeak
196
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2200
Homo sapiens
Biosample type
2208
tissue
1072
primary cell
cell line
393
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
497
pancreas
adipose tissue
360
liver
306
heart
298
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2111
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1419
GRCh38
1291
hg19
Lab
1858
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
files.file_type!
bigBed bedMethyl
lab.title!
Mark McCarthy, Oxford
organ_slims!
adipose tissue
eye
BIOSAMPLE
ASSAY
2208 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
69
278
65
6
1
7
3
1
4
liver
145
167
20
1
2
1
1
1
3
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
2
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